Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanococcus aeolicus Nankai-3 (GCF_000017185.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanococcus aeolicus Nankai-3, or try another query

tpiA MAEO_RS01570 Maeo_0315 WP_011973035.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

66% id,
100% cov

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

56% id,
97% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

55% id,
98% cov

More...

MAEO_RS02460 Maeo_0495 WP_011973213.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

40% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory