Curated BLAST
Searching in Xanthobacter autotrophicus Py2 (GCF_000017645.1)
Found 21 curated entries in PaperBLAST's database that match '4.1.3.39' as complete word(s).
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Xanthobacter autotrophicus Py2, or try another query
dmpG XAUT_RS04725 Xaut_0938 WP_012112958.1: 4-hydroxy-2-oxovalerate aldolase is similar to: | PaperBLAST |
HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli | 69% id, 100% cov |
xylK / P51019: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 70% id, 98% cov |
HOA_PSEUF / P51016: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp. dmpG / P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp. P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp. | 69% id, 97% cov |
todH / P51018: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 67% id, 95% cov |
HOA_PSESP / Q9KWS0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp. | 65% id, 97% cov |
cmtG / Q51983: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 65% id, 96% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 58% id, 96% cov |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans | 58% id, 97% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 55% id, 96% cov |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 49% id, 97% cov |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 42% id, 92% cov |
More... |
nifV XAUT_RS00750 Xaut_0150 WP_011995828.1: homocitrate synthase is similar to: | PaperBLAST |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 28% id, 96% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 26% id, 97% cov |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 26% id, 94% cov |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 28% id, 63% cov |
More... |
XAUT_RS23895 Xaut_4715 WP_012116685.1: citramalate synthase is similar to: | PaperBLAST |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 27% id, 95% cov |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 26% id, 94% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 25% id, 97% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 28% id, 84% cov |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans | 24% id, 84% cov |
More... |
XAUT_RS06660 Xaut_1329 WP_012113349.1: 2-isopropylmalate synthase is similar to: | PaperBLAST |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 25% id, 97% cov |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 27% id, 74% cov |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 27% id, 46% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 33% id, 34% cov |
More... |
XAUT_RS09305 Xaut_1854 WP_012113877.1: hydroxymethylglutaryl-CoA lyase is similar to: | PaperBLAST |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans | 25% id, 72% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory