Curated BLAST for Genomes

 

Curated BLAST

Searching in Xanthobacter autotrophicus Py2 (GCF_000017645.1)

Found 12 curated entries in PaperBLAST's database that match '4.2.1.43' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Xanthobacter autotrophicus Py2, or try another query

XAUT_RS05135 Xaut_1021 WP_012113042.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

BPHYT_RS22715: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Burkholderia phytofirmans

77% id,
99% cov

HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Herbaspirillum seropedicae

74% id,
98% cov

Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp.

73% id,
100% cov

More...

XAUT_RS04735 Xaut_0940 WP_012112960.1: fumarylacetoacetate hydrolase family protein
is similar to:
PaperBLAST

xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii

31% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory