Curated BLAST for Genomes

 

Curated BLAST

Searching in Xanthobacter autotrophicus Py2 (GCF_000017645.1)

Found 4 curated entries in PaperBLAST's database that match 'O-succinylhomoserine sulfhydrylase' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Xanthobacter autotrophicus Py2, or try another query

XAUT_RS02380 Xaut_0471 WP_011996129.1: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

55% id,
98% cov

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

53% id,
95% cov

Ac3H11_2452: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Acidovorax sp.

37% id,
52% cov

More...

metC XAUT_RS23015 Xaut_4545 WP_012116516.1: cystathionine beta-lyase
is similar to:
PaperBLAST

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

30% id,
97% cov

Ac3H11_2452: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Acidovorax sp.

29% id,
97% cov

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

32% id,
84% cov

More...

XAUT_RS19270 Xaut_3804 WP_012115776.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

29% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory