Curated BLAST for Genomes

 

Curated BLAST

Searching in Xanthobacter autotrophicus Py2 (GCF_000017645.1)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Xanthobacter autotrophicus Py2, or try another query

argH XAUT_RS08725 Xaut_1738 WP_012113761.1: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

42% id,
92% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

35% id,
89% cov

N515DRAFT_3770: arginosuccinate lyase (EC 4.3.2.1) from Dyella japonica

32% id,
95% cov

More...

XAUT_RS25620 Xaut_5053 WP_011993154.1: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

29% id,
80% cov

N515DRAFT_3770: arginosuccinate lyase (EC 4.3.2.1) from Dyella japonica

28% id,
82% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

27% id,
81% cov

More...

XAUT_RS25700 Xaut_5068 WP_011993169.1: argininosuccinate lyase
is similar to:
PaperBLAST

N515DRAFT_3770: arginosuccinate lyase (EC 4.3.2.1) from Dyella japonica

28% id,
82% cov

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

26% id,
80% cov

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

23% id,
75% cov

More...

XAUT_RS24685 Xaut_4873 WP_011992986.1: argininosuccinate lyase
is similar to:
PaperBLAST

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

28% id,
82% cov

N515DRAFT_3770: arginosuccinate lyase (EC 4.3.2.1) from Dyella japonica

28% id,
81% cov

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

29% id,
78% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory