Curated BLAST for Genomes

 

Curated BLAST

Searching in Xanthobacter autotrophicus Py2 (GCF_000017645.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxy acid synthase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Xanthobacter autotrophicus Py2, or try another query

XAUT_RS07445 Xaut_1488 WP_041576535.1: acetolactate synthase 3 large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

49% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

47% id,
93% cov

gcl XAUT_RS11905 Xaut_2367 WP_012114387.1: glyoxylate carboligase
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

36% id,
93% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

34% id,
91% cov

XAUT_RS14070 Xaut_2795 WP_012114786.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

31% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

30% id,
95% cov

oxc XAUT_RS02450 Xaut_0486 WP_011996144.1: oxalyl-CoA decarboxylase
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

27% id,
92% cov

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

26% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2641531-2643648 (frame +1) on NC_009720.1 Xanthobacter autotrophicus Py2, complete sequence
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

35% id,
96% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

35% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory