Curated BLAST for Genomes

 

Curated BLAST

Searching in Crocosphaera subtropica ATCC 51142 (GCF_000017845.1)

Found 20 curated entries in PaperBLAST's database that match '1.2.1.16' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Crocosphaera subtropica ATCC 51142, or try another query

CCE_RS19935 cce_4228 WP_009543699.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

B1WSJ7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Crocosphaera subtropica

 100% id,
100% cov

Q8ZPI3: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Salmonella enterica

 47% id,
97% cov

Q82TA7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (EC 1.2.1.90) from Nitrosomonas europaea

 45% id,
98% cov

More...

CCE_RS15270 cce_3229 WP_009547631.1: aldehyde dehydrogenase family protein
is similar to:		 PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

 42% id,
98% cov

SSDH2_SCHPO / Q9UTM8: Putative succinate-semialdehyde dehydrogenase C139.05 [NADP(+)]; SSDH; EC 1.2.1.16 from Schizosaccharomyces pombe

 40% id,
96% cov

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

 39% id,
98% cov

More...

pruA CCE_RS07540 cce_1595 WP_009544399.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

 35% id,
98% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

 33% id,
99% cov

A0A0F4THK8: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Pseudomonas fluorescens

 33% id,
99% cov

More...

CCE_RS12690 cce_2680 WP_009544631.1: aldehyde dehydrogenase
is similar to:		 PaperBLAST

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

 28% id,
94% cov

Q82TA7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (EC 1.2.1.90) from Nitrosomonas europaea

 27% id,
92% cov

B1WSJ7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Crocosphaera subtropica

 27% id,
91% cov

More...

CCE_RS24455 cce_5188 WP_009547561.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:		 PaperBLAST

Q976X5: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii

 25% id,
98% cov

Q82TA7: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (EC 1.2.1.90) from Nitrosomonas europaea

 24% id,
98% cov

A0A0J9X1M8: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) from Streptococcus pyogenes

 24% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory