Curated BLAST for Genomes

 

Curated BLAST

Searching in Crocosphaera subtropica ATCC 51142 (GCF_000017845.1)

Found 37 curated entries in PaperBLAST's database that match '1.2.1.88' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Crocosphaera subtropica ATCC 51142, or try another query

pruA CCE_RS07540 cce_1595 WP_009544399.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

50% id,
99% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Alkalihalobacillus halodurans

49% id,
99% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

49% id,
99% cov

More...

CCE_RS15270 cce_3229 WP_009547631.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

36% id,
92% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

35% id,
94% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

35% id,
94% cov

More...

CCE_RS19935 cce_4228 WP_009543699.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

31% id,
89% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

30% id,
89% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

29% id,
85% cov

More...

CCE_RS24455 cce_5188 WP_009547561.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

24% id,
93% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

23% id,
92% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Alkalihalobacillus halodurans

24% id,
82% cov

More...

CCE_RS12690 cce_2680 WP_009544631.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

26% id,
85% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

25% id,
84% cov

AL4A1_HUMAN / P30038: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; P5C dehydrogenase; Aldehyde dehydrogenase family 4 member A1; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Homo sapiens
ALDH4A1 / P30038: Δ1-pyrroline-5-carboxylate dehydrogenase, mitochondrial subunit (EC 1.2.1.88) from Homo sapiens
P30038: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Homo sapiens

27% id,
67% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory