Curated BLAST for Genomes

 

Curated BLAST

Searching in Crocosphaera subtropica ATCC 51142 (GCF_000017845.1)

Found 44 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Crocosphaera subtropica ATCC 51142, or try another query

thiO CCE_RS26835 cce_0307 WP_009546799.1: glycine oxidase ThiO
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

30% id,
98% cov

DAO_STRCO / Q9X7P6: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Streptomyces coelicolor

26% id,
90% cov

DAO_RUBXD / Q1AYM8: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rubrobacter xylanophilus
Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

29% id,
48% cov

More...

CCE_RS03700 cce_0775 WP_009546015.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

28% id,
93% cov

crtD CCE_RS10530 cce_2220 WP_009546968.1: C-3',4' desaturase CrtD
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

43% id,
10% cov

OXDA_TRIVR / Q99042: D-amino-acid oxidase; DAAO; DAMOX; DAO; TvDAO1; EC 1.4.3.3 from Trigonopsis variabilis
Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

43% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory