Curated BLAST for Genomes

 

Curated BLAST

Searching in Crocosphaera subtropica ATCC 51142 (GCF_000017845.1)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Crocosphaera subtropica ATCC 51142, or try another query

CCE_RS14630 cce_3094 WP_009547763.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 36% id,
94% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 35% id,
94% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 34% id,
94% cov

More...

hemL CCE_RS00820 cce_0172 WP_024750185.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 31% id,
96% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 30% id,
99% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 33% id,
84% cov

More...

CCE_RS14405 cce_3045 WP_009547790.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

A0A0U4XQS6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 5-aminovalerate transaminase (EC 2.6.1.48) from Corynebacterium glutamicum

 24% id,
88% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 26% id,
78% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 29% id,
57% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory