Curated BLAST for Genomes

 

Curated BLAST

Searching in Crocosphaera subtropica ATCC 51142 (GCF_000017845.1)

Found 39 curated entries in PaperBLAST's database that match '2.6.1.57' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Crocosphaera subtropica ATCC 51142, or try another query

CCE_RS12755 cce_2693 WP_009544618.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

39% id,
98% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

38% id,
98% cov

Q9RAT0: aromatic-amino-acid transaminase (EC 2.6.1.57) from Lactococcus lactis

36% id,
91% cov

More...

CCE_RS17620 cce_3727 WP_024750127.1: aspartate aminotransferase
is similar to:
PaperBLAST

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

36% id,
97% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

28% id,
98% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

27% id,
98% cov

More...

CCE_RS04895 cce_1029 WP_009547075.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

36% id,
97% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

27% id,
92% cov

CCE_RS07635 cce_1614 WP_009544417.1: branched-chain amino acid transaminase
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

33% id,
96% cov

CCE_RS05320 cce_1121 WP_009543954.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

Q9C969: aromatic-amino-acid transaminase (EC 2.6.1.57) from Arabidopsis thaliana

32% id,
94% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

30% id,
99% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

28% id,
99% cov

More...

cobD CCE_RS08240 cce_1744 WP_009545561.1: threonine-phosphate decarboxylase CobD
is similar to:
PaperBLAST

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans

31% id,
95% cov

CCE_RS12335 cce_2605 WP_009544705.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

31% id,
89% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

28% id,
92% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

28% id,
92% cov

hisC CCE_RS15565 cce_3292 WP_009547915.1: histidinol-phosphate transaminase
is similar to:
PaperBLAST

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans

28% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1761305-1762447 (frame -3) on NC_010546.1 Crocosphaera subtropica ATCC 51142 chromosome circular, complete sequence
is similar to:
PaperBLAST

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans
Also see hits to annotated proteins above

30% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory