Curated BLAST for Genomes

 

Curated BLAST

Searching in Crocosphaera subtropica ATCC 51142 (GCF_000017845.1)

Found 6 curated entries in PaperBLAST's database that match 'acetohydroxy-acid synthase%small' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Crocosphaera subtropica ATCC 51142, or try another query

ilvN CCE_RS03015 cce_0628 WP_009547809.1: acetolactate synthase small subunit
is similar to:
PaperBLAST

ILVH_MYCTU / P9WKJ3: Putative acetolactate synthase small subunit; Acetohydroxy-acid synthase small subunit; AHAS; ALS; EC 2.2.1.6 from Mycobacterium tuberculosis

52% id,
93% cov

ilvN / O08354: acetohydroxy-acid synthase small subunit (EC 2.2.1.6) from Methanococcus aeolicus

45% id,
98% cov

ILVH_NICPL / Q9SMC2: Acetolactate synthase small subunit 1, chloroplastic; Acetohydroxy-acid synthase small subunit; AHAS; ALS from Nicotiana plumbaginifolia

58% id,
32% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory