Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 21 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sinorhizobium fredii NGR234, or try another query

dapB NGR_RS28555 NGR_c34880 WP_012709958.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q2YJN7: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Brucella abortus

74% id,
100% cov

Q6G2G3: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Bartonella henselae

55% id,
100% cov

DAPB_ECOLI / P04036: 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8 from Escherichia coli
DapB / b0031: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
dapB / P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli

46% id,
99% cov

More...

dapA NGR_RS15385 NGR_c08200 WP_164924233.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

36% id,
99% cov

NGR_RS26230 NGR_c30190 WP_012709515.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

31% id,
96% cov

NGR_RS00075 NGR_b00160 WP_012706097.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

29% id,
97% cov

NGR_RS17830 NGR_c13110 WP_012707868.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

28% id,
87% cov

NGR_RS04260 NGR_b08920 WP_015887005.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

27% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory