Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 16 curated entries in PaperBLAST's database that match '1.4.1.16' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sinorhizobium fredii NGR234, or try another query

NGR_RS28735 NGR_c35260 WP_012709995.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

Q7MW40: diaminopimelate dehydrogenase (EC 1.4.1.16) from Porphyromonas gingivalis

36% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory