Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 3 curated entries in PaperBLAST's database that match '2.6.1.113' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Sinorhizobium fredii NGR234, or try another query

NGR_RS03310 NGR_b06800 WP_015886801.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

40% id,
97% cov

NGR_RS11250 NGR_b23380 WP_015888394.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

41% id,
95% cov

NGR_RS03045 NGR_b06270 WP_015886749.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

40% id,
95% cov

NGR_RS30440 NGR234_383 WP_010875176.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

40% id,
95% cov

NGR_RS23010 NGR_c23690 WP_012708886.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

39% id,
93% cov

NGR_RS07930 NGR_b16510 WP_015887733.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

37% id,
95% cov

NGR_RS27615 NGR_c32980 WP_012709776.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

37% id,
95% cov

NGR_RS09615 NGR_b20050 WP_015888072.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

36% id,
95% cov

rocD NGR_RS26550 NGR_c30830 WP_012709571.1: ornithine--oxo-acid transaminase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
97% cov

NGR_RS24830 NGR_c27370 WP_012709243.1: aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

32% id,
89% cov

NGR_RS06525 NGR_b13670 WP_015887459.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

31% id,
91% cov

NGR_RS23700 NGR_c25110 WP_012709025.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
94% cov

NGR_RS12135 NGR_c01510 WP_164924158.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

27% id,
91% cov

ectB NGR_RS30780 NGR234_317 WP_164924739.1: diaminobutyrate--2-oxoglutarate transaminase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

24% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory