Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 10 curated entries in PaperBLAST's database that match '2.7.1.5' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium fredii NGR234, or try another query

NGR_RS12605 NGR_c02500 WP_012706833.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

SMc03003: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti

80% id,
99% cov

rhaK / Q7BSH0: rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum

52% id,
99% cov

Dshi_2429: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae

51% id,
98% cov

More...

NGR_RS05515 NGR_b11580 WP_240545122.1: FGGY family carbohydrate kinase
is similar to:
PaperBLAST

HSERO_RS22200: Rhamnulokinase (EC 2.7.1.5) from Herbaspirillum seropedicae

38% id,
98% cov

rhaK / Q7BSH0: rhamnulokinase (EC 2.7.1.5) from Rhizobium leguminosarum

33% id,
97% cov

SMc03003: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Sinorhizobium meliloti

32% id,
98% cov

More...

NGR_RS03660 NGR_b07550 WP_015886876.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

Dshi_2429: Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) from Dinoroseobacter shibae

28% id,
60% cov

NGR_RS08395 NGR_b17470 WP_015887822.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

RHAB_ECOLI / P32171: L-Rhamnulokinase; RhaB; RhuK; ATP:L-rhamnulose phosphotransferase; L-rhamnulose 1-kinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli
RhaB / b3904: rhamnulokinase (EC 2.7.1.5) from Escherichia coli
rhaB / P32171: rhamnulokinase (EC 2.7.1.5) from Escherichia coli

21% id,
40% cov

RHAB_ECOUT / Q1R415: Rhamnulokinase; Rhamnulose kinase; EC 2.7.1.5 from Escherichia coli

21% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory