Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 4 curated entries in PaperBLAST's database that match '3.7.1.9' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sinorhizobium fredii NGR234, or try another query

NGR_RS07610 NGR_b15880 WP_015887670.1: alpha/beta hydrolase
is similar to:
PaperBLAST

P96965: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas fluorescens

28% id,
92% cov

NGR_RS17875 NGR_c13210 WP_164924289.1: alpha/beta hydrolase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

28% id,
90% cov

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

38% id,
40% cov

NGR_RS23685 WP_164924446.1: alpha/beta hydrolase
is similar to:
PaperBLAST

P96965: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas fluorescens

26% id,
91% cov

NGR_RS25320 NGR_c28340 WP_012709336.1: alpha/beta hydrolase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

26% id,
88% cov

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

30% id,
56% cov

P96965: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas fluorescens

32% id,
37% cov

NGR_RS19590 NGR_c16700 WP_164924343.1: alpha/beta hydrolase
is similar to:
PaperBLAST

P96965: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas fluorescens

22% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory