Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium fredii NGR234, or try another query

odc2 NGR_RS25770 NGR_c29260 WP_012709425.1: ornithine/lysine decarboxylase
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

33% id,
90% cov

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

33% id,
90% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

29% id,
95% cov

More...

lysA NGR_RS24630 NGR_c26960 WP_012709202.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

26% id,
89% cov

DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus
P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus

26% id,
76% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

23% id,
83% cov

More...

NGR_RS01730 NGR_b03530 WP_012706416.1: Y4yA family PLP-dependent enzyme
is similar to:
PaperBLAST

Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum

28% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3067746-3069017 (frame -3) on NC_012587.1 Sinorhizobium fredii NGR234, complete sequence
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca
Also see hits to annotated proteins above

33% id,
93% cov

DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum
ODC / Q8S3N2: ornithine decarboxylase (EC 4.1.1.17) from Capsicum annuum
Also see hits to annotated proteins above

31% id,
91% cov

DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum
odc / O22616: ornithine decarboxylase (EC 4.1.1.17) from Solanum lycopersicum
Also see hits to annotated proteins above

31% id,
88% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory