Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)
Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).
These curated entries have 35 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Sinorhizobium fredii NGR234, or try another query
odc2 NGR_RS25770 NGR_c29260 WP_012709425.1: ornithine/lysine decarboxylase is similar to: | PaperBLAST |
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca | 33% id, 90% cov |
DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei | 33% id, 90% cov |
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster | 29% id, 95% cov |
lysA NGR_RS24630 NGR_c26960 WP_012709202.1: diaminopimelate decarboxylase is similar to: | PaperBLAST |
DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster | 26% id, 89% cov |
DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus | 26% id, 76% cov |
DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans | 23% id, 83% cov |
NGR_RS01730 NGR_b03530 WP_012706416.1: Y4yA family PLP-dependent enzyme is similar to: | PaperBLAST |
Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum | 28% id, 40% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
3067746-3069017 (frame -3) on NC_012587.1 Sinorhizobium fredii NGR234, complete sequence is similar to: | PaperBLAST |
G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca | 33% id, 93% cov |
DCOR_CAPAN / Q8S3N2: Ornithine decarboxylase; ODC; CaODC1; CapODC; EC 4.1.1.17 from Capsicum annuum | 31% id, 91% cov |
DCOR_SOLLC / O22616: Ornithine decarboxylase; ODC; LeODC; EC 4.1.1.17 from Solanum lycopersicum | 31% id, 88% cov |
Lawrence Berkeley National Laboratory