Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sinorhizobium fredii NGR234, or try another query

tpiA NGR_RS17645 NGR_c12760 WP_012707834.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae
Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae

59% id,
100% cov

TPIS_BACCE / Q4MQ55: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus

44% id,
99% cov

TPIS_CANAL / Q9P940: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Candida albicans
TPI1: triosephosphate isomerase (TIM); EC 5.3.1.1 from Candida albicans

46% id,
94% cov

More...

NGR_RS14620 NGR_c06610 WP_012707239.1: triose-phosphate isomerase
is similar to:
PaperBLAST

Q7X216: triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae

47% id,
95% cov

P35144: triose-phosphate isomerase (EC 5.3.1.1) from Priestia megaterium

43% id,
96% cov

TPIS_BACCE / Q4MQ55: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus

43% id,
97% cov

More...

NGR_RS08355 NGR_b17390 WP_015887814.1: triose-phosphate isomerase
is similar to:
PaperBLAST

Q7X216: triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae

46% id,
95% cov

A0A1D3TX75: triose-phosphate isomerase (EC 5.3.1.1) from Anaerobium acetethylicum

44% id,
96% cov

P35144: triose-phosphate isomerase (EC 5.3.1.1) from Priestia megaterium

43% id,
97% cov

More...

NGR_RS25200 NGR_c28090 WP_012709311.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

48% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory