Curated BLAST for Genomes

 

Curated BLAST

Searching in Sinorhizobium fredii NGR234 (GCF_000018545.1)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase small subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sinorhizobium fredii NGR234, or try another query

leuD NGR_RS26920 NGR_c31560 WP_012709642.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

31% id,
88% cov

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

36% id,
67% cov

acnA NGR_RS03745 NGR_b07740 WP_015886895.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

29% id,
69% cov

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

32% id,
52% cov

acnA NGR_RS27315 NGR_c32380 WP_012709719.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

HACB_THET2 / Q9ZND9: Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysU / Q9ZND9: homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus

42% id,
40% cov

HACB_METJA / Q58667: Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

38% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory