Curated BLAST for Genomes

 

Curated BLAST

Searching in Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 (GCF_000019165.1)

Found 39 curated entries in PaperBLAST's database that match '2.6.1.57' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547, or try another query

HM1_RS11430 HM1_2503 WP_012283547.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

45% id,
96% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

44% id,
97% cov

Q9RAT0: aromatic-amino-acid transaminase (EC 2.6.1.57) from Lactococcus lactis

39% id,
99% cov

More...

HM1_RS02935 HM1_1327 WP_012281785.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

44% id,
92% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

39% id,
93% cov

Q9RAT0: aromatic-amino-acid transaminase (EC 2.6.1.57) from Lactococcus lactis

38% id,
91% cov

More...

HM1_RS10910 HM1_2384 WP_012283431.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

39% id,
96% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

31% id,
93% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

31% id,
93% cov

More...

ilvE HM1_RS06865 HM1_1510 WP_012282596.1: branched-chain-amino-acid transaminase
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

37% id,
91% cov

HM1_RS07415 HM1_1642 WP_041315020.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

31% id,
98% cov

O59096: aromatic-amino-acid transaminase (EC 2.6.1.57) from Pyrococcus horikoshii

30% id,
98% cov

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans

27% id,
96% cov

More...

hisC HM1_RS13875 HM1_3049 WP_012284031.1: histidinol-phosphate transaminase
is similar to:
PaperBLAST

BPHYT_RS14905: Aromatic-amino-acid transaminase (EC 2.6.1.57) from Burkholderia phytofirmans

34% id,
90% cov

ARAT2_THELN / H3ZPU1: Aromatic-amino-acid aminotransferase 2; ARAT-II; AROAT; EC 2.6.1.57 from Thermococcus litoralis

27% id,
98% cov

Ac3H11_1015: Aromatic-amino-acid aminotransferase (EC 2.6.1.57) from Acidovorax sp.

24% id,
82% cov

More...

HM1_RS11370 HM1_2487 WP_012283532.1: branched-chain amino acid aminotransferase
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

30% id,
96% cov

HM1_RS04450 HM1_0993 WP_012282103.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

bacF / P39643: 3-[(2S,5R)-5-hydroxy-7-oxabicyclo[4.1.0]heptan-2-yl]-2-oxopropanoate aminotransferase (EC 2.6.1.57) from Bacillus subtilis

28% id,
96% cov

Q9RAT0: aromatic-amino-acid transaminase (EC 2.6.1.57) from Lactococcus lactis

25% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1514078-1515235 (frame +2) on NC_010337.2 Heliomicrobium modesticaldum Ice1, complete sequence
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
Also see hits to annotated proteins above

36% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory