Curated BLAST for Genomes

 

Curated BLAST

Searching in Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 (GCF_000019165.1)

Found 12 curated entries in PaperBLAST's database that match '4.1.2.19' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547, or try another query

HM1_RS07770 HM1_1725 WP_012282800.1: class II aldolase/adducin family protein
is similar to:
PaperBLAST

R4NQF0: rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Thermotoga maritima

26% id,
93% cov

fabG HM1_RS09790 HM1_2165 WP_041313699.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

Echvi_1572: Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis

27% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory