Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella halifaxensis HAW-EB4 (GCF_000019185.1)

Found 17 curated entries in PaperBLAST's database that match '1.13.11.2' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella halifaxensis HAW-EB4, or try another query

nqrF SHAL_RS08545 Shal_1649 WP_012276753.1: NADH:ubiquinone reductase (Na(+)-transporting) subunit F
is similar to:
PaperBLAST

P23103: catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida

39% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory