Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella halifaxensis HAW-EB4 (GCF_000019185.1)

Found 14 curated entries in PaperBLAST's database that match '1.2.1.39' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Shewanella halifaxensis HAW-EB4, or try another query

SHAL_RS01660 Shal_0328 WP_012275459.1: aldehyde dehydrogenase family protein
is similar to:		 PaperBLAST

pedI / B1N7J6: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 72% id,
100% cov

ALDH2 / P05091: mitochondrial aldehyde dehydrogenase subunit (EC 1.2.1.3; EC 1.2.1.39) from Homo sapiens

 42% id,
93% cov

BALDH_ANTMA / C7A2A0: Benzaldehyde dehydrogenase, mitochondrial; 2-phenylacetaldehyde dehydrogenase; Acetaldehyde dehydrogenase; EC 1.2.1.28; EC 1.2.1.39; EC 1.2.1.3 from Antirrhinum majus

 41% id,
93% cov

More...

SHAL_RS05030 Shal_0987 WP_012276111.1: aldehyde dehydrogenase
is similar to:		 PaperBLAST

ALDH2 / P05091: mitochondrial aldehyde dehydrogenase subunit (EC 1.2.1.3; EC 1.2.1.39) from Homo sapiens

 45% id,
91% cov

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 42% id,
96% cov

STYD_PSEFL / O06837: Phenylacetaldehyde dehydrogenase; PAD; EC 1.2.1.39 from Pseudomonas fluorescens
styD / O06837: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas fluorescens

 41% id,
96% cov

More...

betB SHAL_RS05375 Shal_1058 WP_012276174.1: betaine-aldehyde dehydrogenase
is similar to:		 PaperBLAST

ALDH2 / P05091: mitochondrial aldehyde dehydrogenase subunit (EC 1.2.1.3; EC 1.2.1.39) from Homo sapiens

 44% id,
89% cov

pedI / B1N7J6: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 39% id,
96% cov

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 38% id,
94% cov

More...

gabD SHAL_RS05100 Shal_1001 WP_012276124.1: NADP-dependent succinate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

STYD_PSEFL / O06837: Phenylacetaldehyde dehydrogenase; PAD; EC 1.2.1.39 from Pseudomonas fluorescens
styD / O06837: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas fluorescens

 38% id,
96% cov

pdh / Q5P171: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Aromatoleum aromaticum
Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

 36% id,
99% cov

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

 36% id,
95% cov

More...

SHAL_RS05020 Shal_0985 WP_012276109.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

 34% id,
96% cov

ALDH2 / P05091: mitochondrial aldehyde dehydrogenase subunit (EC 1.2.1.3; EC 1.2.1.39) from Homo sapiens

 32% id,
92% cov

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 31% id,
94% cov

More...

SHAL_RS17760 Shal_3429 WP_012278495.1: coniferyl aldehyde dehydrogenase
is similar to:		 PaperBLAST

ALDH3A2 / P51648: fatty aldehyde dehydrogenase (EC 1.2.1.3; EC 1.2.1.94; EC 1.2.1.39) from Homo sapiens

 36% id,
90% cov

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 31% id,
82% cov

pdh / Q5P171: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Aromatoleum aromaticum
Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

 34% id,
72% cov

More...

putA SHAL_RS18530 Shal_3585 WP_012278646.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:		 PaperBLAST

pdh / Q5P171: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Aromatoleum aromaticum
Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

 33% id,
95% cov

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

 31% id,
99% cov

A0A0A7PB40: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Sphingopyxis fribergensis

 30% id,
95% cov

More...

SHAL_RS10930 Shal_2092 WP_012277181.1: coniferyl aldehyde dehydrogenase
is similar to:		 PaperBLAST

ALDH3A2 / P51648: fatty aldehyde dehydrogenase (EC 1.2.1.3; EC 1.2.1.94; EC 1.2.1.39) from Homo sapiens

 33% id,
91% cov

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 30% id,
83% cov

pdh / Q5P171: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Aromatoleum aromaticum
Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

 28% id,
88% cov

More...

astD SHAL_RS18645 Shal_3608 WP_012278669.1: succinylglutamate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

pdh / Q5P171: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Aromatoleum aromaticum
Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

 32% id,
94% cov

A0A0A7PB40: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Sphingopyxis fribergensis

 32% id,
93% cov

STYD_PSEFL / O06837: Phenylacetaldehyde dehydrogenase; PAD; EC 1.2.1.39 from Pseudomonas fluorescens
styD / O06837: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas fluorescens

 31% id,
93% cov

More...

SHAL_RS14890 Shal_2877 WP_012277953.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

STYD_PSEFL / O06837: Phenylacetaldehyde dehydrogenase; PAD; EC 1.2.1.39 from Pseudomonas fluorescens
styD / O06837: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas fluorescens

 32% id,
95% cov

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 31% id,
97% cov

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

 31% id,
96% cov

More...

SHAL_RS19995 Shal_3874 WP_012278931.1: aldehyde dehydrogenase family protein
is similar to:		 PaperBLAST

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 33% id,
92% cov

A0A0A7PB40: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Sphingopyxis fribergensis

 32% id,
92% cov

pdh / Q5P171: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Aromatoleum aromaticum
Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

 30% id,
96% cov

More...

SHAL_RS13305 Shal_2557 WP_012277641.1: aldehyde dehydrogenase (NADP(+))
is similar to:		 PaperBLAST

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

 26% id,
94% cov

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

 27% id,
79% cov

adhE SHAL_RS11740 Shal_2250 WP_012277338.1: bifunctional acetaldehyde-CoA/alcohol dehydrogenase
is similar to:		 PaperBLAST

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

 24% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3497596-3499173 (frame -3) on NC_010334.1 Shewanella halifaxensis HAW-EB4, complete sequence
is similar to:		 PaperBLAST

STYD_PSEFL / O06837: Phenylacetaldehyde dehydrogenase; PAD; EC 1.2.1.39 from Pseudomonas fluorescens
styD / O06837: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 31% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory