Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella halifaxensis HAW-EB4 (GCF_000019185.1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella halifaxensis HAW-EB4, or try another query

prpC SHAL_RS10215 Shal_1962 WP_012277058.1: 2-methylcitrate synthase
is similar to:
PaperBLAST

PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis
SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis

77% id,
99% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

75% id,
99% cov

Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa

71% id,
99% cov

More...

SHAL_RS12975 Shal_2494 WP_012277579.1: citrate synthase
is similar to:
PaperBLAST

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

35% id,
95% cov

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

32% id,
98% cov

P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis

32% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory