Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella halifaxensis HAW-EB4 (GCF_000019185.1)

Found 15 curated entries in PaperBLAST's database that match '2.7.2.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella halifaxensis HAW-EB4, or try another query

purT SHAL_RS04710 Shal_0924 WP_012276049.1: formate-dependent phosphoribosylglycinamide formyltransferase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

66% id,
99% cov

ackA SHAL_RS13495 Shal_2595 WP_012277679.1: acetate kinase
is similar to:
PaperBLAST

AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / P0A6A3: acetate kinase (EC 2.7.2.15; EC 2.7.2.7) from Escherichia coli

62% id,
100% cov

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

46% id,
99% cov

ackA / P71104: acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum

46% id,
98% cov

More...

SHAL_RS14195 Shal_2738 WP_012277819.1: acetate kinase
is similar to:
PaperBLAST

AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / P0A6A3: acetate kinase (EC 2.7.2.15; EC 2.7.2.7) from Escherichia coli

58% id,
100% cov

ackA / E3PRH0: acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii

43% id,
99% cov

TDCD_ECOLI / P11868: Propionate kinase; EC 2.7.2.15 from Escherichia coli
YhaA / b3115: propionate kinase (EC 2.7.2.7; EC 2.7.2.1; EC 2.7.2.15; EC 2.7.2.14) from Escherichia coli

44% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory