Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella halifaxensis HAW-EB4 (GCF_000019185.1)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.27' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella halifaxensis HAW-EB4, or try another query

SHAL_RS02065 Shal_0409 WP_012275539.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

33% id,
99% cov

SHAL_RS17190 Shal_3317 WP_012278385.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

27% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory