Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylobacterium sp. 4-46 Apr-46 (GCF_000019365.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylobacterium sp. 4-46 Apr-46, or try another query

M446_RS29110 M446_6026 WP_012335681.1: homoserine kinase
is similar to:
PaperBLAST

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

50% id,
97% cov

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

40% id,
97% cov

M446_RS10295 M446_2170 WP_012332041.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

32% id,
83% cov

M446_RS11440 M446_2399 WP_012332266.1: helix-turn-helix transcriptional regulator
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

33% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory