Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylobacterium sp. 4-46 Apr-46 (GCF_000019365.1)

Found 1 curated entries in PaperBLAST's database that match '4.2.1.52' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylobacterium sp. 4-46 Apr-46, or try another query

dapA M446_RS03430 M446_0697 WP_012330674.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

41% id,
96% cov

M446_RS18420 M446_3845 WP_012333617.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

31% id,
98% cov

M446_RS16815 M446_3517 WP_012333299.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

26% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory