Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 10 curated entries in PaperBLAST's database that match '1.14.13.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

BIND_RS04230 Bind_0833 WP_012383840.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

26% id,
97% cov

BIND_RS09150 Bind_1807 WP_244395994.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

26% id,
94% cov

BIND_RS07135 Bind_1405 WP_012384402.1: FAD-dependent monooxygenase
is similar to:
PaperBLAST

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

23% id,
83% cov

PHHY_PSEAE / P20586: p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa

23% id,
83% cov

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

23% id,
80% cov

More...

BIND_RS13150 Bind_2603 WP_012385549.1: FAD-dependent monooxygenase
is similar to:
PaperBLAST

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

25% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory