Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 3 curated entries in PaperBLAST's database that match '1.14.13.33' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

BIND_RS07135 Bind_1405 WP_012384402.1: FAD-dependent monooxygenase
is similar to:
PaperBLAST

PRAI_PAESP / C4TP09: 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp.

33% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2968213-2969469 (frame +1) on NC_010581.1 Beijerinckia indica subsp. indica ATCC 9039, complete sequence
is similar to:
PaperBLAST

PHHA_EMENI / C8VBV0: p-hydroxybenzoate-m-hydroxylase; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Emericella nidulans

30% id,
14% cov

PHHA_ASPNC / A2QGH7: p-hydroxybenzoate-m-hydroxylase A; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Aspergillus niger

28% id,
14% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory