Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 21 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

dapB BIND_RS00670 Bind_0132 WP_012383148.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q2YJN7: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Brucella abortus

64% id,
100% cov

Q6G2G3: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Bartonella henselae

54% id,
100% cov

DAPB_ECOLI / P04036: 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8 from Escherichia coli
DapB / b0031: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
dapB / P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli

46% id,
99% cov

More...

dapA BIND_RS09460 Bind_1870 WP_012384851.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

39% id,
99% cov

BIND_RS15600 Bind_3080 WP_012385989.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

23% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory