Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

BIND_RS01565 Bind_0308 WP_012383320.1: prephenate/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

A0A101IGG2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Methanothrix harundinacea

23% id,
83% cov

gnd BIND_RS02335 Bind_0459 WP_012383470.1: decarboxylating 6-phosphogluconate dehydrogenase
is similar to:
PaperBLAST

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

23% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory