Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 20 curated entries in PaperBLAST's database that match '2.7.1.165' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

BIND_RS08725 Bind_1721 WP_012384708.1: glycerate kinase
is similar to:
PaperBLAST

GCK_THEMA / Q9X1S1: D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima
Q9X1S1: glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima

40% id,
100% cov

GCK_PYRHO / O58231: Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Pyrococcus horikoshii
O58231: glycerate 2-kinase (EC 2.7.1.165) from Pyrococcus horikoshii

38% id,
97% cov

GCK_SULTO / Q96YZ3: Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Sulfurisphaera tokodaii
ST2037 / Q96YZ3: glycerate 2-kinase monomer (EC 2.7.1.165) from Sulfurisphaera tokodaii
Q96YZ3: glycerate 2-kinase (EC 2.7.1.165) from Sulfurisphaera tokodaii

33% id,
99% cov

More...

BIND_RS11180 Bind_2209 WP_012385183.1: glycerate kinase
is similar to:
PaperBLAST

GCK_PYRHO / O58231: Glycerate 2-kinase; GCK; 2-phosphoglycerate forming glycerate kinase; EC 2.7.1.165 from Pyrococcus horikoshii
O58231: glycerate 2-kinase (EC 2.7.1.165) from Pyrococcus horikoshii

37% id,
97% cov

GCK_THEMA / Q9X1S1: D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima
Q9X1S1: glycerate 2-kinase (EC 2.7.1.165) from Thermotoga maritima

39% id,
92% cov

Q703V9: glycerate 2-kinase (EC 2.7.1.165) from Thermoproteus tenax

36% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory