Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 25 curated entries in PaperBLAST's database that match '2.7.2.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

argB BIND_RS16900 Bind_3330 WP_041778980.1: acetylglutamate kinase
is similar to:
PaperBLAST

Q6V1L5: acetylglutamate kinase (EC 2.7.2.8) from Synechococcus elongatus

49% id,
93% cov

ARGB_THEMA / Q9X2A4: Acetylglutamate kinase; N-acetyl-L-glutamate 5-phosphotransferase; NAG kinase; NAGK; EC 2.7.2.8 from Thermotoga maritima
Q9X2A4: acetylglutamate kinase (EC 2.7.2.8) from Thermotoga maritima

46% id,
97% cov

ARGB_PSEAE / Q9HTN2: Acetylglutamate kinase; N-acetyl-L-glutamate 5-phosphotransferase; NAG kinase; NAGK; EC 2.7.2.8 from Pseudomonas aeruginosa
Q9HTN2: acetylglutamate kinase (EC 2.7.2.8) from Pseudomonas aeruginosa

47% id,
96% cov

More...

BIND_RS04530 Bind_0891 WP_012383897.1: aspartate kinase
is similar to:
PaperBLAST

Q59281: acetylglutamate kinase (EC 2.7.2.8) from Corynebacterium glutamicum

29% id,
52% cov

Q6R6P5: acetylglutamate kinase (EC 2.7.2.8) from Corynebacterium crenatum

29% id,
48% cov

ARGB_MYCTU / P9WQ01: Acetylglutamate kinase; N-acetyl-L-glutamate 5-phosphotransferase; NAG kinase; NAGK; EC 2.7.2.8 from Mycobacterium tuberculosis

33% id,
23% cov

argC BIND_RS07005 Bind_1380 WP_012384377.1: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

ARG56_SCHPO / P31318: Protein arg11, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe
arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

32% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3787644-3788579 (frame +3) on NC_010581.1 Beijerinckia indica subsp. indica ATCC 9039, complete sequence
is similar to:
PaperBLAST

Q6V1L5: acetylglutamate kinase (EC 2.7.2.8) from Synechococcus elongatus
Also see hits to annotated proteins above

48% id,
96% cov

ARGB_MYCTU / P9WQ01: Acetylglutamate kinase; N-acetyl-L-glutamate 5-phosphotransferase; NAG kinase; NAGK; EC 2.7.2.8 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

41% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory