Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia indica subsp. indica ATCC 9039 (GCF_000019845.1)

Found 10 curated entries in PaperBLAST's database that match '4.1.2.17' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Beijerinckia indica subsp. indica ATCC 9039, or try another query

BIND_RS05255 Bind_1036 WP_280110007.1: class II aldolase/adducin family protein
is similar to:
PaperBLAST

FUCA_ECOLI / P0AB87: L-fuculose phosphate aldolase; D-ribulose-phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Escherichia coli
Prd / b2800: L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli
fucA / P0AB87: L-fuculose-phosphate aldolase (EC 4.1.2.17) from Escherichia coli

51% id,
98% cov

BWI76_RS22915: L-fuculose phosphate aldolase (EC 4.1.2.17) from Klebsiella michiganensis

49% id,
98% cov

FUCA_METJA / Q58813: L-fuculose phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Methanocaldococcus jannaschii
MJ1418 / Q58813: fuculose-1-phosphate aldolase subunit (EC 4.1.2.17) from Methanocaldococcus jannaschii
Q58813: L-fuculose-phosphate aldolase (EC 4.1.2.17) from Methanocaldococcus jannaschii

27% id,
91% cov

BIND_RS10510 Bind_2082 WP_012385059.1: aldolase
is similar to:
PaperBLAST

F8D9F5: D-ribulose 1-phosphate aldolase (EC 4.1.2.17) from Halopiger xanaduensis

36% id,
89% cov

BT1274: L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase from Bacteroides thetaiotaomicron

28% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory