Curated BLAST for Genomes

 

Curated BLAST

Searching in Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 (GCF_000020025.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102, or try another query

NPUN_RS07930 Npun_F1563 WP_012408270.1: MFS transporter
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

23% id,
64% cov

NPUN_RS28290 Npun_R5592 WP_012411841.1: DHA2 family efflux MFS transporter permease subunit
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

22% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory