Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Paraburkholderia phymatum STM815 (GCF_000020045.1)

Found 17 curated entries in PaperBLAST's database that match '4.1.3.4' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia phymatum STM815, or try another query

BPHY_RS00820 Bphy_0165 WP_012399587.1: hydroxymethylglutaryl-CoA lyase is similar to:	PaperBLAST
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa	60% id, 100% cov
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus	58% id, 90% cov
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus	58% id, 90% cov
mvaB / GB\|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii	52% id, 99% cov
HMGCL_HUMAN / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Homo sapiens HMGCL / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial (EC 4.1.3.4) from Homo sapiens P35914: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Homo sapiens	57% id, 90% cov
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti	54% id, 94% cov
HMGC2_RAT / D4A5C3: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; EC 4.1.3.4 from Rattus norvegicus	55% id, 88% cov
HMGC2_HUMAN / Q8TB92: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; HMGCL-like 1; Endoplasmic reticulum 3-hydroxy-3-methylglutaryl-CoA lyase; er-cHL; EC 4.1.3.4 from Homo sapiens	56% id, 79% cov
HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis	42% id, 97% cov
HMGCL_ARATH / O81027: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Arabidopsis thaliana	58% id, 63% cov
CA265_RS13115: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Pedobacter sp.	33% id, 93% cov
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans	43% id, 51% cov
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BPHY_RS21385 Bphy_4250 WP_012403543.1: hydroxymethylglutaryl-CoA lyase is similar to:	PaperBLAST
HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis	44% id, 98% cov
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti	41% id, 97% cov
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa	38% id, 95% cov
HMGCL_HUMAN / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Homo sapiens HMGCL / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial (EC 4.1.3.4) from Homo sapiens P35914: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Homo sapiens	40% id, 88% cov
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus	43% id, 82% cov
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus	42% id, 82% cov
mvaB / GB\|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii	37% id, 92% cov
HMGC2_RAT / D4A5C3: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; EC 4.1.3.4 from Rattus norvegicus	40% id, 78% cov
HMGC2_HUMAN / Q8TB92: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; HMGCL-like 1; Endoplasmic reticulum 3-hydroxy-3-methylglutaryl-CoA lyase; er-cHL; EC 4.1.3.4 from Homo sapiens	39% id, 72% cov
CA265_RS13115: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Pedobacter sp.	29% id, 92% cov
HMGCL_ARATH / O81027: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Arabidopsis thaliana	39% id, 59% cov
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans	37% id, 48% cov
More...

BPHY_RS32925 Bphy_6613 WP_012405800.1: hydroxymethylglutaryl-CoA lyase is similar to:	PaperBLAST
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa	39% id, 91% cov
HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis	36% id, 94% cov
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti	36% id, 94% cov
mvaB / GB\|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii	35% id, 93% cov
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus	36% id, 89% cov
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus	36% id, 89% cov
HMGCL_HUMAN / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Homo sapiens HMGCL / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial (EC 4.1.3.4) from Homo sapiens P35914: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Homo sapiens	35% id, 89% cov
HMGC2_RAT / D4A5C3: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; EC 4.1.3.4 from Rattus norvegicus	36% id, 79% cov
HMGC2_HUMAN / Q8TB92: 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; HMGCL-like 1; Endoplasmic reticulum 3-hydroxy-3-methylglutaryl-CoA lyase; er-cHL; EC 4.1.3.4 from Homo sapiens	34% id, 74% cov
CA265_RS13115: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Pedobacter sp.	26% id, 95% cov
HMGCL_ARATH / O81027: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Arabidopsis thaliana	37% id, 61% cov
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans	42% id, 47% cov
More...

dmpG BPHY_RS17780 Bphy_3510 WP_012402832.1: 4-hydroxy-2-oxovalerate aldolase is similar to:	PaperBLAST
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus	24% id, 88% cov
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus	28% id, 41% cov

dmpG BPHY_RS22825 Bphy_4539 WP_322789037.1: 4-hydroxy-2-oxovalerate aldolase is similar to:	PaperBLAST
HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus	23% id, 88% cov
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus	23% id, 88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory