Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia phymatum STM815 (GCF_000020045.1)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia phymatum STM815, or try another query

kdsD BPHY_RS01645 Bphy_0331 WP_041763231.1: arabinose 5-phosphate isomerase KdsD
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

55% id,
96% cov

BPHY_RS03130 Bphy_0625 WP_012400036.1: bifunctional transcriptional regulator/glucokinase
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

26% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory