Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia phymatum STM815 (GCF_000020045.1)

Found 17 curated entries in PaperBLAST's database that match '5.3.1.7' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia phymatum STM815, or try another query

BPHY_RS00740 Bphy_0149 WP_012399571.1: AGE family epimerase/isomerase
is similar to:
PaperBLAST

BPHYT_RS02050: D-mannose isomerase (EC 5.3.1.7) from Burkholderia phytofirmans

87% id,
98% cov

Ac3H11_2078: D-mannose isomerase (EC 5.3.1.7) from Acidovorax sp.

56% id,
97% cov

MANI_MARM1 / F2JVT6: D-mannose isomerase; MI; EC 5.3.1.7 from Marinomonas mediterranea

54% id,
98% cov

More...

BPHY_RS21660 Bphy_4306 WP_012403596.1: AGE family epimerase/isomerase
is similar to:
PaperBLAST

Ac3H11_2078: D-mannose isomerase (EC 5.3.1.7) from Acidovorax sp.

27% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory