Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

gdhA GLOV_RS02780 Glov_0573 WP_327191869.1: NADP-specific glutamate dehydrogenase
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

56% id,
100% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

50% id,
100% cov

GUDB_BACSU / P50735: Cryptic catabolic NAD-specific glutamate dehydrogenase GudB; NAD-GDH; EC 1.4.1.2 from Bacillus subtilis

34% id,
99% cov

More...

GLOV_RS03380 Glov_0691 WP_012468773.1: NAD-glutamate dehydrogenase domain-containing protein
is similar to:
PaperBLAST

A0A1D8PI00: glutamate dehydrogenase (EC 1.4.1.2) from Candida albicans

31% id,
59% cov

GLUD2_DICDI / Q54VI3: Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum

30% id,
60% cov

GDH2_SCHPO / Q9USN5: Probable NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Schizosaccharomyces pombe

30% id,
55% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory