Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 63 curated entries in PaperBLAST's database that match '2.3.1.9' as complete word(s).

These curated entries have 52 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

GLOV_RS06530 Glov_1329 WP_012469396.1: thiolase family protein
is similar to:
PaperBLAST

I3R3D1: acetyl-CoA C-acetyltransferase (subunit 2/2) (EC 2.3.1.9) from Haloferax mediterranei

29% id,
94% cov

I3RA72: acetyl-CoA C-acetyltransferase (subunit 2/2) (EC 2.3.1.9) from Haloferax mediterranei

28% id,
95% cov

fabF GLOV_RS09615 Glov_1934 WP_012469989.1: beta-ketoacyl-ACP synthase II
is similar to:
PaperBLAST

B1YB71: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Pyrobaculum neutrophilum

26% id,
35% cov

GLOV_RS11225 Glov_2267 WP_012470317.1: type I polyketide synthase
is similar to:
PaperBLAST

ER10B_ASPFC / B0YA65: Acetyl-CoA acetyltransferase erg10B, cytosolic; Acetoacetyl-CoA thiolase erg10B; ACAT; Cytosolic thiolase erg10B; CT; Ergosterol biosynthesis protein 10B; EC 2.3.1.9 from Aspergillus fumigatus
ER10B_ASPFU / Q4WCL5: Acetyl-CoA acetyltransferase erg10B, cytosolic; Acetoacetyl-CoA thiolase erg10B; ACAT; Cytosolic thiolase erg10B; CT; Ergosterol biosynthesis protein 10B; EC 2.3.1.9 from Aspergillus fumigatus

31% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2417064-2423879 (frame +3) on NC_010814.1 Trichlorobacter lovleyi SZ, complete sequence
is similar to:
PaperBLAST

Q0K368: acetyl-CoA C-acetyltransferase (EC 2.3.1.9) from Cupriavidus necator

27% id,
56% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory