Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 19 curated entries in PaperBLAST's database that match '2.5.1.48' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

GLOV_RS15170 Glov_3070 WP_012471101.1: PLP-dependent aspartate aminotransferase family protein
is similar to:		 PaperBLAST

METB_HELPX / Q1M0P5: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Helicobacter pylori
Q1M0P5: cystathionine gamma-synthase (EC 2.5.1.48) from Helicobacter pylori

 51% id,
99% cov

METB_MYCTU / P9WGB7: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Mycobacterium tuberculosis

 47% id,
96% cov

A0PKT3: cystathionine gamma-synthase (EC 2.5.1.48) from Mycobacterium ulcerans

 46% id,
96% cov

More...

GLOV_RS15175 Glov_3071 WP_012471102.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

METB_HELPX / Q1M0P5: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Helicobacter pylori
Q1M0P5: cystathionine gamma-synthase (EC 2.5.1.48) from Helicobacter pylori

 49% id,
99% cov

METB_MYCTU / P9WGB7: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Mycobacterium tuberculosis

 44% id,
96% cov

A0PKT3: cystathionine gamma-synthase (EC 2.5.1.48) from Mycobacterium ulcerans

 44% id,
96% cov

More...

GLOV_RS01700 Glov_0359 WP_012468444.1: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
is similar to:		 PaperBLAST

Ac3H11_2452: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Acidovorax sp.

 38% id,
93% cov

metZ / P55218: O-succinyl-L-homoserine sulfhydrylase (EC 2.5.1.48) from Pseudomonas aeruginosa

 35% id,
95% cov

HSERO_RS16440: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) from Herbaspirillum seropedicae

 36% id,
92% cov

More...

GLOV_RS11475 Glov_2316 WP_012470365.1: aminotransferase class V-fold PLP-dependent enzyme
is similar to:		 PaperBLAST

METB_HELPX / Q1M0P5: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 from Helicobacter pylori
Q1M0P5: cystathionine gamma-synthase (EC 2.5.1.48) from Helicobacter pylori

 23% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory