Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 28 curated entries in PaperBLAST's database that match '2.5.1.54' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

aroF GLOV_RS04480 Glov_0911 WP_012468984.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

61% id,
97% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

50% id,
99% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

51% id,
86% cov

More...

aroF GLOV_RS13875 Glov_2802 WP_012470844.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

61% id,
97% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

51% id,
99% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

51% id,
86% cov

More...

aroF GLOV_RS13260 Glov_2678 WP_012470721.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

61% id,
96% cov

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

52% id,
99% cov

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

49% id,
89% cov

More...

GLOV_RS12365 Glov_2496 WP_012470543.1: 3-deoxy-7-phosphoheptulonate synthase
is similar to:
PaperBLAST

AroF / b2601: 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive (EC 2.5.1.54) from Escherichia coli
aroF / P00888: 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive (EC 2.5.1.54) from Escherichia coli
P00888: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

56% id,
96% cov

AroG / b0754: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
aroG / P0AB91: 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive (EC 2.5.1.54) from Escherichia coli
C3TIE2: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Escherichia coli

50% id,
99% cov

Q9K169: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Neisseria meningitidis

50% id,
97% cov

More...

kdsA GLOV_RS10765 Glov_2172 WP_012470226.1: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

A0A482F152: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from uncultured bacterium

30% id,
90% cov

Q9YEJ7: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Aeropyrum pernix

27% id,
91% cov

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

29% id,
70% cov

More...

GLOV_RS08170 Glov_1646 WP_012469704.1: hypothetical protein
is similar to:
PaperBLAST

Q9WYH8: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Thermotoga maritima

29% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory