Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

purT GLOV_RS02085 Glov_0434 WP_012468519.1: formate-dependent phosphoribosylglycinamide formyltransferase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

59% id,
99% cov

GLOV_RS08705 Glov_1754 WP_012469810.1: acetate kinase
is similar to:
PaperBLAST

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

53% id,
99% cov

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502: acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila

53% id,
97% cov

P0CW04: acetate kinase (EC 2.7.2.1) from Methanosarcina mazei

51% id,
97% cov

More...

accC GLOV_RS07900 Glov_1598 WP_012469656.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

22% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory