Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 12 curated entries in PaperBLAST's database that match '3.7.1.22' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

GLOV_RS05490 Glov_1114 WP_012469185.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

BWI76_RS03090: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Klebsiella michiganensis

27% id,
91% cov

Pf1N1B4_4279: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

27% id,
91% cov

SMc01166: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Sinorhizobium meliloti

28% id,
88% cov

More...

GLOV_RS03855 Glov_0786 WP_012468868.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

AO356_23185: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

23% id,
90% cov

BWI76_RS03090: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Klebsiella michiganensis

23% id,
89% cov

SMc01166: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Sinorhizobium meliloti

28% id,
58% cov

More...

ilvB GLOV_RS12400 Glov_2503 WP_012470550.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

IOLD_BACSU / P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; THcHDO hydrolase; EC 3.7.1.22 from Bacillus subtilis
iolD / P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase (EC 3.7.1.22) from Bacillus subtilis
P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Bacillus subtilis

23% id,
88% cov

GLOV_RS11850 Glov_2390 WP_012470439.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

Q9L3I0: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Rhizobium leguminosarum

33% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1165504-1167201 (frame +1) on NC_010814.1 Trichlorobacter lovleyi SZ, complete sequence
is similar to:
PaperBLAST

BWI76_RS03090: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Klebsiella michiganensis
Also see hits to annotated proteins above

27% id,
94% cov

2566364-2568073 (frame -1) on NC_010814.1 Trichlorobacter lovleyi SZ, complete sequence
is similar to:
PaperBLAST

HSERO_RS12130: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Herbaspirillum seropedicae
Also see hits to annotated proteins above

36% id,
22% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory