Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)
Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).
These curated entries have 16 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Trichlorobacter lovleyi SZ, or try another query
| GLOV_RS14990 Glov_3033 WP_012471064.1: diaminopimelate decarboxylase is similar to: | PaperBLAST |
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli | 31% id, 98% cov |
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis | 28% id, 97% cov |
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron | 27% id, 97% cov |
| speA GLOV_RS08315 Glov_1675 WP_012469733.1: arginine decarboxylase is similar to: | PaperBLAST |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 23% id, 77% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 28% id, 63% cov |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 26% id, 67% cov |
| GLOV_RS02785 Glov_0574 WP_012468657.1: aspartate kinase is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 27% id, 45% cov |
| GLOV_RS12540 Glov_2531 WP_012470577.1: aspartate kinase is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 25% id, 48% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2705602-2706837 (frame +1) on NC_010814.1 Trichlorobacter lovleyi SZ, complete sequence is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 25% id, 49% cov |
Lawrence Berkeley National Laboratory