Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 13 curated entries in PaperBLAST's database that match '4.1.2.29' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

GLOV_RS04670 Glov_0949 WP_012469022.1: class II fructose-bisphosphate aldolase
is similar to:
PaperBLAST

IOLJ_BACSU / P42420: 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase; DKGP aldolase; EC 4.1.2.29 from Bacillus subtilis
iolJ / P42420: 5-dehydro-2-deoxyphosphogluconate aldolase (EC 4.1.2.29) from Bacillus subtilis

35% id,
98% cov

PGA1_c07220: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) from Phaeobacter inhibens

30% id,
94% cov

hldE GLOV_RS04810 Glov_0977 WP_012469050.1: bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
is similar to:
PaperBLAST

SMc01165: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Sinorhizobium meliloti

30% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory