Curated BLAST for Genomes

 

Curated BLAST

Searching in Trichlorobacter lovleyi SZ (GCF_000020385.1)

Found 21 curated entries in PaperBLAST's database that match '6.3.4.5' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Trichlorobacter lovleyi SZ, or try another query

GLOV_RS15565 Glov_3148 WP_012471178.1: argininosuccinate synthase
is similar to:
PaperBLAST

ASSY_THET8 / P59846: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermus thermophilus

62% id,
98% cov

ASSY_MOUSE / P16460: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Mus musculus
P16460: argininosuccinate synthase (EC 6.3.4.5) from Mus musculus

51% id,
98% cov

ASSY_RAT / P09034: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Rattus norvegicus

50% id,
98% cov

More...

queC GLOV_RS05935 Glov_1207 WP_012469277.1: 7-cyano-7-deazaguanine synthase QueC
is similar to:
PaperBLAST

N515DRAFT_3766: arginosuccinate synthetase (EC 6.3.4.5) from Dyella japonica

28% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory