Curated BLAST
Searching in Chlorobium limicola DSM 245 (GCF_000020465.1)
Found 32 curated entries in PaperBLAST's database that match '2.7.1.71' as complete word(s).
These curated entries have 17 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Chlorobium limicola DSM 245, or try another query
CLIM_RS04760 Clim_0946 WP_012465901.1: shikimate kinase is similar to: | PaperBLAST |
AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis | 39% id, 89% cov |
AROL_DICCH / P10880: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi | 35% id, 95% cov |
AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli | 38% id, 86% cov |
CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus | 37% id, 83% cov |
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii | 33% id, 91% cov |
AROK_HELPY / P56073: Shikimate kinase; SK; EC 2.7.1.71 from Helicobacter pylori | 31% id, 97% cov |
Q6GGG1: shikimate kinase (EC 2.7.1.71) from Staphylococcus aureus | 27% id, 99% cov |
AROL_ECOLI / P0A6E1: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli AroL / b0388: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli aroL / P0A6E1: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli | 31% id, 80% cov |
SK3_ORYSJ / Q7X7H9: Shikimate kinase 3, chloroplastic; OsSK3; EC 2.7.1.71 from Oryza sativa Q7X7H9: shikimate kinase (EC 2.7.1.71) from Oryza sativa | 35% id, 64% cov |
SK1_ORYSJ / Q5NTH4: Shikimate kinase 1, chloroplastic; OsSK1; EC 2.7.1.71 from Oryza sativa Q5NTH4: shikimate kinase (EC 2.7.1.71) from Oryza sativa | 33% id, 63% cov |
SK1_ARATH / Q9SJ05: Shikimate kinase 1, chloroplastic; AtSK1; EC 2.7.1.71 from Arabidopsis thaliana SK1 / Q9SJ05: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana | 34% id, 57% cov |
SK_SOLLC / Q00497: Shikimate kinase, chloroplastic; EC 2.7.1.71 from Solanum lycopersicum | 36% id, 54% cov |
SK2_ARATH / Q8GY88: Shikimate kinase 2, chloroplastic; AtSK2; EC 2.7.1.71 from Arabidopsis thaliana SK2 / Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana | 33% id, 57% cov |
More... |
aroB CLIM_RS04755 Clim_0945 WP_012465900.1: 3-dehydroquinate synthase is similar to: | PaperBLAST |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans | 37% id, 22% cov |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 38% id, 14% cov |
aroA CLIM_RS10675 Clim_2123 WP_012467016.1: 3-phosphoshikimate 1-carboxyvinyltransferase is similar to: | PaperBLAST |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans | 24% id, 27% cov |
CLIM_RS09480 Clim_1886 WP_150081661.1: 3-dehydroquinate synthase is similar to: | PaperBLAST |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans | 29% id, 19% cov |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 27% id, 15% cov |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 25% id, 9% cov |
aroE CLIM_RS09055 Clim_1797 WP_012466709.1: shikimate dehydrogenase is similar to: | PaperBLAST |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae | 28% id, 17% cov |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans | 43% id, 4% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory